PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00406.1.p
Common NameLOC105973153, MIMGU_mgv1a009353mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 345aa    MW: 37185.5 Da    PI: 9.8478
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00406.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.3e-31271328359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYeg+Hnh+
  Migut.H00406.1.p 271 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDNPTMLIVTYEGDHNHS 328
                       99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.3E-16221267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-32260328IPR003657WRKY domain
PROSITE profilePS5081130.343264330IPR003657WRKY domain
SuperFamilySSF1182901.57E-26266328IPR003657WRKY domain
SMARTSM007749.5E-37269329IPR003657WRKY domain
PfamPF031061.5E-26271327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAVELMMNYR NSSFVSQSSS EEKAAAAEAS SGLQSVEKLI RLFSSSSSTS SHHQTVEAAE  60
TDYAAVADAA VSKFKRAISL LGPARTGHAR FRRAPVSAAA AATSPPASSS SSPNSDEPET  120
HGYRNSNTKI YCPTPIQQIP PPDYHLNNKE YSSSKTISFS YSPAISRVNS FVSSLTGADS  180
ENKLQLQVHP SSSSAFQIIS SSNNNNNSAA KPPLSSSSSF KRKCTSSENA FSGQCSGSSS  240
RCHCTKRRKL RLKRVIMVPA ISMKMSDIPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG  300
CPARKHVERA VDNPTMLIVT YEGDHNHSLS VLADTPTTMI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-202653291073WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853631.10.0PREDICTED: probable WRKY transcription factor 15
TrEMBLA0A022RWX10.0A0A022RWX1_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000642561e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-63WRKY DNA-binding protein 15